Hervé Marie-Nelly
PhD Applied Maths
Machine Learning
Bioinformatics
Email:
LinkedIn:
linkedin.com/in/hervemarienelly
Hello! I'm Hervé
I'm a Post-doc in bioinformatics and cell biology currently working at the University of California at Berkeley (Tjian Darzacq Lab).
Research Interest:
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Cell biology
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Genome Assembly
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Biological macromolecules and their interactions
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Bayesian networks
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Modeling of complex systems
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Massively parallel programming (CUDA, OpenCI)
Current projects:
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Meta Genomic assembly
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3D localization of transcription factors in the cell nucleus
EXPERIENCE
Oct 2014-now
Post-doc
Postdoctoral associate, High-resolution microscopy and modelling of spatial and dynamic organization of RNA Polymerase II and Transcription factors in human cells.
Tijan/Darzacq lab: California Institute of Regenerative Medicine, University of California at Berkeley.
Jan 2009-Sept 2014
Post-doc
Postdoctoral associate, high-quality genome assembly and metagenomics.
Romain Koszul lab: Spatial Regulation of Genomes, Institut Pasteur, Paris, France.
Apr - Aug 2009
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Quantification of mRNA strands elongation from 3D FISH microscopy images.
Christophe Zimmer lab: Imaging and Modelling Unit, Institute Pasteur, Paris, France.
Jun- Jul 2008
Professor
High school mathematics teacher and analyst for a water drilling project in a village of the Western Province of Kenya.
Foundation for Sustainable Development (FSD), Nairobi, Kenya
EDUCATION
2010-2013
Doctorate´s Degree
PhD in Applied Mathematics and Bioinformatics
Université Pierre et Marie Curie, Paris, France
Supervisors: Dr Christophe Zimmer and Dr Romain Koszul
(Pasteur Institute, Paris)
Jury members: Prof Claude Thermes, Prof Hugues Roest Croellius, Prof Frédéric Deveaux, Prof Erwan Le Pennec, Dr Dawn Thompson
Dissertation title: A probabilistic approach for genome assembly from chromosome conformation capture data.
2008-2009
Master´s Degree
Master (MSc) in applied mathematics
Ecole Normale Superieure, Cachan, France
Speciality: Applied mathematics, Machine learning and Computer vision (MVA)
2006-20008
Master´s Degree
Master (MSc) in applied mathematics
Ecole Normale Superieure, Cachan, France
Speciality: Probabilities and Random Models
Erasmus student exchange at the Complutense University of Madrid, Spain.
2004-2006
Bachelor´s Degree
BSc in fundamental mathematics
Université René Descartes, Paris, France​
PUBLICATIONS
2010-2013
Doctorate´s Degree
PhD in Applied Mathematics and Bioinformatics
Université Pierre et Marie Curie, Paris, France
Supervisors: Dr Christophe Zimmer and Dr Romain Koszul
(Pasteur Institute, Paris)
Jury members: Prof Claude Thermes, Prof Hugues Roest Croellius, Prof Frédéric Deveaux, Prof Erwan Le Pennec, Dr Dawn Thompson
Dissertation title: A probabilistic approach for genome assembly from chromosome conformation capture data.
SKILLS
Biology - Human cell culture, PCR
Microscopy - Widefield, Confocal, PALM and STORM super resolution microscopy
French - Native language
English - Fluent
Spanish - Fluent
Dutch - Notions
EXPERTISE
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